Discovering Precise Temporal Patterns in Large-Scale Neural Recordings through Robust and Interpretable Time Warping

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Biodiversity assessment in ecological restoration above the timberline

Ecological restoration trials in high-alpine sites require sampling of indigenous plant populations. This problem is discussed briefly in relation to initial genetic diversity in the restoration material. The further part of the paper deals with restoration trials in the Swiss Alps and their assessment.The plots, set in machine-graded downhill ski runs, were revegetated with transplants of alpine species used in various combinations. Safe-site conditions were simulated with biodegradable wood-fibre mats. Surveys carried out in plots aged four to seven years focused on plant species inventory and age-state structure of mixed stands. The alpha diversity assessment included speices number and the associated aspects. The consistent increase in species number, the number of plant families represented, and range of life-forms was apparently independent of the restoration timing. The age-state structure of the mixed stands was characterized by a considerable increase in the range of age-state classes and, in particular, a regular appearance of younger variants. These changes clearly indicate development of self-sustaining plant communities influenced by reproduction of the transplants and extensive immigration. It is proposed that age-state structure be called delta diversity and included in a routine assessment of post-restoration status of both single plant populations and mixed stands.     

The eutrophication of shallow coastal lakes in Southwest England — understanding and recommendations for restoration,based on palaeolimnology,historical records,and the modelling of changing phosphorus loads

Palaeolimnological studies of sediments from Slapton Ley and Loe Pool, two coastal freshwater lakes in Southwest England, show that in the period since 1945, they have been eutrophicated by nutrient inputs from intensification of agriculture, but also from sewage effluent. Two simple models have been used to identify the main sources of catchment outputs, and in the case of Slapton Ley, to evaluate historical changes in land use, and their likely effect on lake trophic status.Restoration strategies may also be evaluated using the same models. They suggest that in order to reduce loads on either lake to within OECD permissible limits, not only will all sewage inputs need to be prevented, and non-phosphate detergents used, but also losses from agricultural land must be reduced. This could take the form of the keeping of fewer cattle (the main source of organic nitrogen and phosphorus in both catchments), or the zoning of the respective catchments so that steep slopes close to riparian zones are not used, as at present, for the grazing of livestock.A better option, however, would appear to be the establishment along most of the rivers draining into these lakes, of buffer strips of woodland at least 15 m wide. According to the models, this measure, along with treatment or diversion of sewage effluent, would reduce phosphorus loads upon the lakes to within acceptable limits.     

Wetland drying indirectly influences plant community and seed bank diversity through soil pH

High altitude wetlands on the Tibetan Plateau have been shrinking due to anthropogenic disturbances and global climate change. However, the few studies that have been conducted on wetlands are inconclusive about the effect of soil moisture on seed banks and potential of seed banks in wetlands with different levels of soil moisture for regeneration of dried wetlands. We investigated seed banks and plant communities along a soil moisture gradient. A structural equation model was used to analyze the direct and indirect effects of soil moisture on seed banks, as well as the relationship between plant communities and seed banks. Although soil moisture had no direct effects on seed bank richness and density and indirect effects on seed banks through plant community, it had indirect effects on the seed bank through soil pH. Soil moisture also did not have direct effects on plant community richness, but it had indirect effects through soil pH. Plant community composition changed with soil moisture, but aboveground plant abundance and seed banks composition did not change. Low similarity exists between plant community and seed banks for all wetlands, and similarity decreased along the moisture gradient. The key factor determining plant community diversity was soil pH, while seed bank diversity was mainly affected by soil pH and plant community diversity with wetland drying. Although potential for regenerating the plant community from the seed bank decreased with an increase in soil moisture, drained wetlands still have enough residual seeds for successful restoration of species-rich alpine meadows.     

Genetic and allelopathic differences between populations of daisy fleabane Erigeron annuus (L.) Pers. (Asteraceae) from disturbed and stable habitats

The interactions between invasive plants and their habitats may vary at different phases of the invasion process and depend on the phenotypic plasticity or local adaptations of each species. In this study, we investigated whether habitat changes during the invasion process are related to variations in the physiological traits (allelopathic properties) and genetic differentiation of daisy fleabane (Erigeron annuus (L.) Pers.). E. annuus is a winter annual invasive species that originated in North America and is now distributed throughout Europe. Genetic and genotypic diversity analyses were performed for 37 populations of E. annuus based on inter simple sequence repeat (ISSR) polymorphisms. In total, 684 plants were analyzed; 342 were from stable habitats and 342 were from disturbed habitats. The genetic differences among the populations from the different habitats were studied using a Bayesian cluster analysis and an analysis of molecular variance (AMOVA) and by calculating the genetic and genotypic diversity parameters. A germination test using the juglone index was employed to examine the potential allelopathic properties of the plants from the different habitats. Bayesian cluster analysis, AMOVA and allelopathic effects evaluation revealed differences in the allelopathic potential and genetic structure of the E. annuus populations from the disturbed and stable habitats. This differentiation of populations could be associated with founder effects or with different selection pressures among habitats.     

Low mtDNA Cytb diversity and shallow population structure of Eleutheronema tetradactylum in the East China Sea and the South China Sea

Eleutheronema tetradactylum is an economically important fish species in China water. To investigate the genetic diversity and describe population structure of it, an 1151 base pair (bp) fragment of the mitochondrial DNA Cytb sequence was analyzed in 120 individuals from four populations in the East China Sea and the South China Sea. A total of 16 haplotypes were defined by 24 variable nucleotide sites. High level of haplotype diversity and low nucleotide diversity were observed in all populations. The results of AMOVA detected that 89.44% of the genetic variation occurred within populations. Significant genetic differentiations were detected among populations (0.05097, P < 0.05), but no large-scale regional differences were detected. Analysis of neutral evolution and mismatch distribution suggested no recent population expansion happened. The present results provided new information for genetic assessment, fishery management and conservation of this species.     

Finite time blow-up in some models of chemotaxis

We consider a class of models of chemotactic bacterial populations, introduced by Keller-Segel. For those models, we investigate the possibility of chemotactic collapse, in other words, the possibility that in finite time the population of predators aggregates to form a delta-function. To study this phenomenon, we construct self-similar solutions, which may or may not blow-up (in finite time), depending on the relative strength of three mechanisms in competition: (i) the chemotactic attraction of bacteria towards regions of high concentration in substrate (ii) the rate of consumption of the substrate by the bacteria and (iii) (possibly) the diffusion of bacteria. The solutions we construct are radially symmetric, and therefore have no relation with the classical traveling wave solutions. Our scaling can be justified by a dimensional analysis. We give some evidence of numerical stability.     

Butterfly Response to Microclimatic Conditions Following Ponderosa Pine Restoration

Efforts to restore ponderosa pine ecosystems to open, park‐like conditions that predominated prior to European‐American settlement result in altered stand structure and increased landscape heterogeneity, potentially altering habitat suitability for invertebrates and other forest organisms. We examined the responses of two butterfly species, Colias eurytheme and Neophasia menapia, to microclimatic changes at structural edges created by experimental restoration treatments in northern Arizona. We monitored microclimate, including air temperature, light intensity, and vapor pressure deficit (VPD), on several mornings during butterfly releases. We placed adult butterflies at east‐ and west‐facing edges approximately one half‐hour before dawn to determine their behavioral response to microclimatic differences between east‐ and west‐facing edges. After sunrise, all three microclimatic variables were higher at east‐facing edges, and the difference in microclimate between the two edge orientations increased through early morning. For both species, butterflies placed at east‐facing edges flew earlier than butterflies at west‐facing edges. Colias eurytheme, an open‐habitat species, tended to move toward the treated forest during initial flight, while movements of Neophasia menapia, a forest‐dwelling species, did not differ from random flight. Our results indicate that butterflies respond to microclimatic factors associated with restoration treatments, while responses to structural changes in habitat vary among species, based on habitat and food plant preferences. These changes in forest structure and microclimate may affect the distribution of many mobile invertebrates in forested landscapes undergoing restoration treatments.